Best Shopify Accounting App And Software Services With Integration To Xero Or QuickBooks Online

Are you running a Shopify store and struggling to keep your books clean and accurate?

I’ve been there too.

As a seller myself, I know how overwhelming it can get when sales, fees, and payouts don’t line up nicely in your accounting software.

So if you’re looking for the best Shopify accounting app with integration to Xero or QuickBooks Online, I want to share one of my favorite solutions with you: Link My Books.

Here’s a video where I walk you through this in detail.

I also welcome you to get a free trial of Link My Books.

And the Link My Books coupon code VOVA20 will grant you 50% OFF for 3 months!

Why Accounting for Shopify Is Tricky

Shopify payouts aren’t always straightforward.

You’ve got sales, fees, refunds, shipping costs, maybe even multiple currencies.

And if you’re also selling on platforms like Amazon, Etsy, Walmart, eBay, or TikTok Shop, the complexity multiplies.

If you’re manually entering this data into Xero or QuickBooks, you already know:

1. It takes forever.

2. It’s easy to make mistakes.

3. It’s hard to really see how profitable your store is.

This is one of the most common pain points I hear from eCommerce sellers.

Free Trial of Link My Books + 50% OFF Coupon VOVA20 for 3 Months

It’s not just about recording numbers, it’s about having numbers you can trust.

And without the right tools, this becomes a guessing game that can cost you money (and peace of mind).

For some tips on avoiding these common pitfalls, you might like this: 3 Common Bookkeeping Mistakes of e-Commerce Sellers.

What Is Link My Books?

Link My Books is a bookkeeping and accounting software connector built specifically for eCommerce sellers.

It syncs your Shopify sales data directly into Xero or QuickBooks Online; no manual entry needed.

Here’s what I love about it:

1. Simple Setup - You can connect your Shopify store and accounting software in just a few clicks.

2. Automatic Reports - It creates clean summaries of your sales, fees, refunds, and payouts.

3. Multi-Platform Support - Besides Shopify, you can also connect Amazon, Etsy, Walmart, eBay, and TikTok Shop.

4. Accurate Mapping - It uses proper tax and account mapping so you avoid messy books.

5. Time & Cost Savings - Less time reconciling means more time to focus on growing your store.

This isn’t just for big businesses either.

Even if you’re a solo seller or just starting, the time you save quickly pays for itself.

For an in‑depth look at Link My Books and why it’s a top accounting solution for e‑commerce sellers, check this out: THE Best Accounting Software For Ecommerce Business - Link My Books

How to Use Link My Books (Step by Step)

If you’re like me, you probably want to see how it works before diving in.

That’s why I sat down with Daniel Little, the co-founder of Link My Books, to go through everything from A to Z.

Watch our full tutorial here:

And if you’d like to dig even deeper into features, tips, and updates, here’s an exclusive playlist of Link My Books tutorials you can check out anytime.

Dive into My Playlist of Link My Books Tutorials

Why I Recommend It for Shopify Sellers

I recommend Link My Books because it helps you:

1. Get accurate profit & loss reports.

2. Avoid overpaying on taxes (because every fee and refund was properly accounted for).

3. Understand true cash flow with clear, reconciled numbers.

Hence, no more hours spent matching transactions line by line.

And for anyone who’s not super techy, don’t worry.

It’s intuitive.

You don’t need to be a CPA to use it.

If you’re selling on multiple platforms, this becomes even more valuable.

One dashboard, one workflow, and a whole lot less stress. I also included Link My Books in my list of 2 best tools for Shopify sellers. Discover the other one inside!

Should You Integrate With Xero or QuickBooks?

That’s up to you, and really depends on your workflow.

1. Xero: Great for Shopify sellers who like clean, straightforward reports and a flexible interface.

2. QuickBooks Online: More robust for businesses that need advanced features or already use QuickBooks for other operations.

Luckily, Link My Books supports both.

So you can choose what works best for your store.

Final Thoughts

If you’ve been doing your Shopify bookkeeping manually or using clunky spreadsheets, this is a total time saver.

Link My Books takes care of the hard stuff so you can focus on running and scaling your store.

Ready to try it out?

Grab Free Trial of Link My Books + 50% OFF Coupon VOVA20 for 3 Months Now

Here’s to gaining financial clarity for your Shopify business!