Best Accounting & Bookkeeping Software For Square - Integration Plugin, Connect To QuickBooks & Xero

When you’re using Square to run your business, keeping your finances in order can feel like an extra job.

Every sale, refund, and fee comes through in waves, and before you know it, your accounting software looks nothing like your Square dashboard.

That’s when the question hits: What’s the best way to make Square and my accounting system speak the same language?

After years of running e-commerce stores and testing different accounting tools, I’ve found something that truly works: Link My Books.

Free Trial Of Link My Books + Use Coupon Code VOVA20 To Get 50% OFF Link My Books for 3 Months

The Challenge of Accounting for Square

Square makes it easy to sell, no doubt.

It tracks your payments, processes your fees, and keeps your checkout simple.

But once the money hits your bank, that’s where things often get messy.

QuickBooks or Xero won’t automatically understand how to separate your sales from your fees or refunds unless you manually tell them.

That means a lot of time spent entering numbers, reconciling deposits, and double-checking taxes.

It’s accurate, but it’s not efficient, and that’s exactly what Link My Books was built to change.

Learn more about why accurate accounting matters and how it protects your profits and business growth: Why Is Accurate Accounting Important for Your Business?

A Smarter Way To Connect Square with Xero or QuickBooks

Here’s what Link My Books does differently.

Once you connect your Square account, it automatically imports your transactions, organizes them properly, and sends them straight to Xero or QuickBooks Online.

Instead of individual line items for every sale, it creates clean, summarized entries that still show the full detail when you need it; sales, fees, refunds, and taxes included.

The result?

Your accounting software stays up to date without you lifting a finger.

And the totals you see in Xero or QuickBooks match your Square payouts perfectly.

Everything is accurately accounted for, including VAT, GST, and Sales Tax.

That’s what I call financial clarity without the grind.

Free Trial Of Link My Books + Use Coupon Code VOVA20 To Get 50% OFF Link My Books for 3 Months

For Sellers, Accountants, and Bookkeepers Alike

What I love most about Link My Books is how versatile it is.

For sellers, it simplifies bookkeeping so you can spend more time growing your business.

For accountants and bookkeepers, it makes managing multiple clients easier by letting automation handle the heavy work.

To see how it works in practice, watch my tutorials with Daniel Little, co-founder of Link My Books.

-: e-Commerce Sellers :-

This video walks you through setup all the way to final reports.

Or read: Link My Books Tutorial: Elevate e-Commerce Accounting & Bookkeeping!

-: Accountants and Bookkeepers :-

This version focuses on workflows designed specifically for your needs.

You’ll learn how to automate bookkeeping, avoid common mistakes, and grow your practice with far less manual effort.

Want to explore even more?

Check out my entire playlist of tutorials and helpful videos through the button below!

Check out My YouTube Playlist of Link My Books Videos 

Connect and Manage All Sales Channels Easily

Even though we’re talking about Square here, Link My Books doesn’t stop there.

It also connects to Shopify, Amazon, eBay, Etsy, TikTok Shop, Walmart, and WooCommerce.

That means if you sell across multiple platforms, you can keep all your financial data organized under one roof.

Your reports stay consistent, your accounting stays synced, and you get one clear picture of your overall performance.

It’s a simple idea, but it’s powerful in practice.

That’s exactly why I recommend Link My Books as the best accounting and bookkeeping software for Amazon sellers and e-commerce in general.

Final Thoughts

Square makes sales simple; but bookkeeping, not so much.

That’s where Link My Books steps in and changes the story.

It quietly bridges the gap between your payment data and your accounting platform, turning what used to be a messy process into something smooth and consistent.

When your books are automatically updated, you’re not just saving time; you’re gaining confidence.

You’ll always know what your true profit looks like, what taxes you owe, and how your store is really performing.

That insight helps you make better business decisions, not just faster ones.

And that’s the point of good accounting software; not just to organize numbers, but to give you clarity about where your business stands.

So if you’re tired of reconciling deposits manually, double-checking tax figures, or wondering if your reports are even right, it’s time to let automation take over.

Link My Books will keep your data aligned between Square, Xero, and QuickBooks, freeing you up to focus on what actually grows your business.

Try it out, see it work, and enjoy knowing that your numbers finally make sense.

Free Trial Of Link My Books + Use Coupon Code VOVA20 To Get 50% OFF Link My Books for 3 Months

P.S. - I regularly publish new tutorials and updates about Link My Books. Here’s the most recent one: What Accounting & Bookkeeping Software Work Best With Walmart - Integrates With QuickBooks & Xero