What Accounting & Bookkeeping Software Works Best With WooCommerce - Connects With Xero & QuickBooks

Running a store on WooCommerce is great until it’s time to make sense of your numbers.

Sales, fees, refunds, and taxes start piling up, and suddenly you’re spending more time organizing spreadsheets than selling.

So, what’s the best accounting and bookkeeping software that actually works with WooCommerce?

If you use Xero or QuickBooks, the missing piece is an integration tool called Link My Books.

Free Trial Of Link My Books + Use Coupon Code VOVA20 To Get 50% OFF Link My Books for 3 Months

Link My Books connects WooCommerce directly to your accounting software and automates the entire bookkeeping process.

If you’d like to see how the connection works in real time, check out this full walkthrough:

Why WooCommerce Accounting Can Be Tricky

WooCommerce gives sellers control and flexibility, but when it comes to accounting, things can get complicated fast.

Each payout includes multiple layers of data: sales, refunds, fees, and taxes.

Manually entering this into your accounting system can lead to errors and take hours every month.

That’s where Link My Books comes in.

It simplifies the entire process by syncing your WooCommerce store directly with your Xero or QuickBooks Online account, keeping your books clean and consistent automatically.

How Link My Books Works With WooCommerce

Here’s what happens once you set it up:

1. Connect Your Accounts – You connect your WooCommerce store to Link My Books and link your Xero or QuickBooks account.

2. Automatic Sync – Every order, refund, and fee from WooCommerce is imported automatically.

3. Smart Summaries – Instead of hundreds of line items, you get easy-to-read summaries showing total sales, refunds, and taxes.

4. Accurate Matching – Payouts line up perfectly with your bank deposits inside your accounting software.

5. Tax-Ready – Supports VAT, GST, and Sales Tax for accurate reporting and compliance.

Everything runs in the background, giving you accurate e-commerce accounting on autopilot.

Free Trial Of Link My Books + Use Coupon Code VOVA20 To Get 50% OFF Link My Books for 3 Months

Multi-channel Compatibility

If you sell on multiple platforms, you’re going to love this.

Link My Books also integrates with:

1. Shopify

2. Amazon

3. eBay

4. Etsy

5. Walmart

6. TikTok Shop

7. Square POS

That means you can manage all your e-commerce accounting from one place; no switching tools, no exporting CSV files.

For multichannel sellers, this is a huge time-saver.

Built for Sellers, Accountants and Bookkeepers

Link My Books is designed for everyone involved in e-commerce finances.

If you’re a WooCommerce seller, it helps you stay organized and focus on growth instead of manual bookkeeping.

-: Watch my 30-minute tutorial with the cofounder of Link My Books, Daniel Little, to learn everything you need to know before getting started :-

Or Read: Link My Books Tutorial: Elevate e-Commerce Accounting & Bookkeeping!

Likewise, if you’re an accountant or bookkeeper, Link My Books helps you serve more clients efficiently.

It’s precise, time-saving, and built to fit naturally into your workflow.

-: Here’s our 41-minute dedicated tutorial where Daniel breaks down how Link My Books saves you time so you can onboard more clients and stay stress-free. :-

We also discuss pricing and FAQs in both videos, so they’re a must watch if you really want to make the most out of this tool.

And if you want to explore more advanced tips or see the latest integrations, check out the full playlist here:

Check out My YouTube Playlist of Link My Books Videos 

Final Thoughts

WooCommerce gives you control of your store.

Link My Books gives you control of your numbers.

It bridges your store data with Xero or QuickBooks, turning messy transaction lists into simple, accurate records you can trust.

Every sale, fee, and refund flows automatically into your books; clean, clear, and ready for reconciliation.

If you’ve been looking for a way to simplify your WooCommerce accounting, this is it.

It’s not just convenient; it’s reliable, transparent, and built for real online sellers.

Try it once, and you’ll wonder how you managed without it.

Free Trial Of Link My Books + Use Coupon Code VOVA20 To Get 50% OFF Link My Books for 3 Months

Accurate books. Less stress. More time to grow your business.

P.S. - I regularly publish new tutorials and updates about Link My Books. Here’s the most recent one: What Accounting & Bookkeeping Software Works Best With Square - Integrates With Xero & QuickBooks